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Plant Transcriptional Regulatory Map
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Regulation Prediction
This tool infers potential regulatory interactions between TFs and input genes, and finds the TFs which possess over-represented targets in the input gene set. More...
The sets of high-quality binding motifs of TFs and FIMO are used to scan TF binding sites in the promoters, and an interaction is assigned if there are one or more binding sites of a TF in the promoter of a gene. The genome assembly and annotation version described in the data source are used to extract promoter sequences when the coordinates of promoters/genes or gene sequences are input. The regulations predicted from the promoter regions (defined by users) of all annotated genes will be used as the background for enrichment analysis. In addition, refined regulation prediction using previous identified footprints is supported now.
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If you get a 524 timeout error, please copy this link( https://plantregmap.gao-lab.org/regulation_prediction_result.php?userid=250403512902251) in advance and visit it half an hour later to view the results.

Format:
Format:
Input
Or upload a file:
Background positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
promoter
sequences in FASTA format: exampleOr upload a file:
Background positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
Input
Or upload a file:
Background positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
promoter
region in GTF/GFF3 format: exampleOr upload a file:
Background positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
Input
Or upload a file:
Background positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
promoter
region in BED format: exampleOr upload a file:
Background positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
Input
Or upload a file:
Promoter positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
gene
sequences in FASTA format: exampleOr upload a file:
Promoter positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
Input
Or upload a file:
Promoter positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
gene
region in GTF/GFF3 format: exampleOr upload a file:
Promoter positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
Input
Or upload a file:
Promoter positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
gene
region in BED format: exampleOr upload a file:
Promoter positions relative to TSS of genes: -bp to +bp (range from -2000 to +100)
Threshold (for binding site prediction) p-value ≤
©2016-2019, Center
for Bioinformatics, Peking University Last Modified: 2019-10-11 Questions or Comments, please contact ![]() |