Plant Transcriptional Regulatory Map
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1. TF list, sequences and binding motifs
2. cis-elements
2.1 DNase I hypersensitive sites (DHSs, DNase-seq)
2.2 DNase I digital genomic footprinting (DGF, DNase-seq)
2.3 Histone modifications (HMs, ChIP-seq)
2.4 Nucleosome positioning (NP, MNase-seq)
2.5 TF binding sites (TFBSs, ChIP-seq)
2.6 Conserved elements (CEs, comparative genomics)
2.7 Predicted TFBS
3. Regulations/Networks2.2 DNase I digital genomic footprinting (DGF, DNase-seq)
2.3 Histone modifications (HMs, ChIP-seq)
2.4 Nucleosome positioning (NP, MNase-seq)
2.5 TF binding sites (TFBSs, ChIP-seq)
2.6 Conserved elements (CEs, comparative genomics)
2.7 Predicted TFBS
4. GO annotation
5. ID mapping
6. Gene sequences
7. Comparative genomics
2. cis-elements Back to Top
2.1 DNase I hypersensitive sites (DHSs, DNase-seq)Back to Top
Species | Organ | Condition | DHS Peak |
Arabidopsis thaliana | flower | 14 days | download |
Arabidopsis thaliana | open flower | normal | download |
Arabidopsis thaliana | inflorescence | normal | download |
Arabidopsis thaliana | leaf | normal | download |
Arabidopsis thaliana | root | normal | download |
Arabidopsis thaliana | root | 7 days | download |
Arabidopsis thaliana | root hair | 7 days | download |
Arabidopsis thaliana | root non hair | 7 days | download |
Arabidopsis thaliana | root non hair | 10 days | download |
Arabidopsis thaliana | seed coat | 4 days past anthesis rep1 | download |
Arabidopsis thaliana | seed coat | 4 days past anthesis rep2 | download |
Arabidopsis thaliana | seed coat | 7 days past anthesis | download |
Arabidopsis thaliana | seedling | normal | download |
Arabidopsis thaliana | seedling | 7 day old Control | download |
Arabidopsis thaliana | seedling | 7 day old Dark | download |
Arabidopsis thaliana | seedling | 7 day old Dark 30min light | download |
Arabidopsis thaliana | seedling | 7 day old Dark 3hr light | download |
Arabidopsis thaliana | seedling | 7 day old Dark 24hr | download |
Arabidopsis thaliana | seedling | 7 day old Heat Shock | download |
Arabidopsis thaliana | seedling | Bay-0 7 day old | download |
Arabidopsis thaliana | seedling | Bur-0 7 day old | download |
Arabidopsis thaliana | seedling | Est-1 7 day old | download |
Arabidopsis thaliana | seedling | Tsu-1 7 day old | download |
Oryza sativa subsp. japonica | callus | 14 days | download |
Oryza sativa subsp. japonica | seedling | 14 days | download |
View the related data source
2.2 DNase I digital genomic footprinting (DGF, DNase-seq)Back to Top
Species | Organ | Condition | DGF | Regulation |
Arabidopsis thaliana | root | 7 days | download | download |
Arabidopsis thaliana | root non hair | 7 days | download | download |
Arabidopsis thaliana | root non hair | 10 days | download | download |
Arabidopsis thaliana | seed coat | 4 days past anthesis | download | download |
Arabidopsis thaliana | seedling | 7 day old Control | download | download |
Arabidopsis thaliana | seedling | 7 day old Dark | download | download |
Arabidopsis thaliana | seedling | 7 day old Dark 30min light | download | download |
Arabidopsis thaliana | seedling | 7 day old Dark 3hr light | download | download |
Arabidopsis thaliana | seedling | 7 day old Dark 24hr | download | download |
Arabidopsis thaliana | seedling | 7 day old Heat Shock | download | download |
Arabidopsis thaliana | seedling | Bay-0 7 day old | download | download |
Arabidopsis thaliana | seedling | Bur-0 7 day old | download | download |
Arabidopsis thaliana | seedling | Est-1 7 day old | download | download |
View the related data source
2.3 Histone modifications (HMs, ChIP-seq)Back to Top
Species | Organ | Condition | Type | Peak |
Arabidopsis thaliana | aerial | two-week-old | H3K36me3 | download |
Arabidopsis thaliana | leaf | normal | H3K23ac | download |
Arabidopsis thaliana | leaf | normal | H4K16ac | download |
Arabidopsis thaliana | rosette leaf | normal | H3K4me1 | download |
Arabidopsis thaliana | rosette leaf | mature fully-expanded 29d | H3K4me3 | download |
Arabidopsis thaliana | rosette leaf | mature fully-expanded 35d | H3K4me3 | download |
Arabidopsis thaliana | rosette leaf | mature fully-expanded 42d | H3K4me3 | download |
Arabidopsis thaliana | rosette leaf | mature fully-expanded 57d | H3K4me3 | download |
Arabidopsis thaliana | rosette leaf | normal | H3K4me3 | download |
Arabidopsis thaliana | rosette leaf | normal | H3K9ac | download |
Arabidopsis thaliana | rosette leaf | mature fully-expanded 30d | H3K9ac | download |
Arabidopsis thaliana | rosette leaf | mature fully-expanded 34d | H3K9ac | download |
Arabidopsis thaliana | rosette leaf | mature fully-expanded 42d | H3K9ac | download |
Arabidopsis thaliana | rosette leaf | normal | H3T3ph | download |
Arabidopsis thaliana | seedling | 12DAG seedlings | H3K27me3 | download |
Arabidopsis thaliana | seedling | normal | H3K27me3 | download |
Arabidopsis thaliana | seedling | Young seedlings | H3K27me3 | download |
Arabidopsis thaliana | seedling | 12DAG seedlings | H3K4me3 | download |
Arabidopsis thaliana | shoot | 28DAG seedlings | H3K9me2 | download |
Brassica napus | leaf | normal | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | 0 hr before starvation | H3K27ac | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 1 hr | H3K27ac | download |
Chlamydomonas reinhardtii | whole | Sulfur starvation 1 hr | H3K27ac | download |
Chlamydomonas reinhardtii | whole | 0 hr before starvation | H3K36me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 1 hr | H3K36me3 | download |
Chlamydomonas reinhardtii | whole | Sulfur starvation 1 hr | H3K36me3 | download |
Chlamydomonas reinhardtii | whole | 0 hr before starvation | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 10 min | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 1 hr | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 24 hr | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 2 hr | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 30 min | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 48 hr | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 6 hr | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 8 hr | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | Sulfur starvation 1 hr | H3K4me3 | download |
Chlamydomonas reinhardtii | whole | 0 hr before starvation | H3K9me3 | download |
Chlamydomonas reinhardtii | whole | Nitrogen starvation 1 hr | H3K9me3 | download |
Chlamydomonas reinhardtii | whole | Sulfur starvation 1 hr | H3K9me3 | download |
Eucalyptus grandis | secondary xylem | Developing | H3K4me3 | download |
Oryza sativa subsp. japonica | leaf | normal | H3K23ac | download |
Oryza sativa subsp. japonica | leaf | normal | H4K16ac | download |
Oryza sativa subsp. japonica | seedling | normal | H3K36me3 | download |
Oryza sativa subsp. japonica | seedling | normal | H3K4me2 | download |
Oryza sativa subsp. japonica | seedling | normal | H4K12ac | download |
View the related data source
2.4 Nucleosome positioning (NP, MNase-seq)Back to Top
Species | Organ | Condition | Peak |
Zea mays | root | Seedling Root Heavy Rep 1 | download |
Zea mays | root | Seedling Root Heavy Rep 2 | download |
Zea mays | root | Seedling Root Light Rep 1 | download |
Zea mays | root | Seedling Root Light Rep 2 | download |
Zea mays | shoot | Seedling Shoot Heavy Rep 1 | download |
Zea mays | shoot | Seedling Shoot Heavy Rep 2 | download |
Zea mays | shoot | Seedling Shoot Light Rep 1 | download |
Zea mays | shoot | Seedling Shoot Light Rep 2 | download |
View the related data source
2.5 TF binding sites (TFBSs, ChIP-seq)Back to Top
Species | TF | Organ | Condition | Peak | Regulation |
Arabidopsis thaliana | AT1G24260 | inflorescence | 5-7 weeks old rep1 | download | - |
Arabidopsis thaliana | AT4G18960 | inflorescence | normal rep1 | download | download |
Arabidopsis thaliana | AT4G18960 | inflorescence | normal rep2 | download | download |
Arabidopsis thaliana | AT1G22640 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT1G22640 | seedling | normal | download | download |
Arabidopsis thaliana | AT1G49720 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT1G49720 | seedling | normal | download | download |
Arabidopsis thaliana | AT1G49950 | seedling | normal rep1 | download | download |
Arabidopsis thaliana | AT1G49950 | seedling | normal rep2 | download | download |
Arabidopsis thaliana | AT1G51140 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT1G51140 | seedling | normal | download | download |
Arabidopsis thaliana | AT1G56170 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT1G56170 | seedling | normal | download | download |
Arabidopsis thaliana | AT1G77450 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT1G77450 | seedling | normal | download | download |
Arabidopsis thaliana | AT2G01570 | seedling | normal rep1 | download | download |
Arabidopsis thaliana | AT2G01570 | seedling | normal rep2 | download | download |
Arabidopsis thaliana | AT2G01570 | seedling | normal rep3 | download | download |
Arabidopsis thaliana | AT2G22430 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT2G22430 | seedling | normal | download | download |
Arabidopsis thaliana | AT2G43010 | seedling | normal rep1 | download | download |
Arabidopsis thaliana | AT2G43010 | seedling | normal rep2 | download | download |
Arabidopsis thaliana | AT2G43010 | seedling | normal rep3 | download | download |
Arabidopsis thaliana | AT2G43010 | seedling | normal rep4 | download | download |
Arabidopsis thaliana | AT2G43010 | seedling | normal rep5 | download | download |
Arabidopsis thaliana | AT2G46270 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT2G46270 | seedling | normal | download | download |
Arabidopsis thaliana | AT2G46680 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT2G46680 | seedling | normal | download | download |
Arabidopsis thaliana | AT2G46830 | seedling | normal rep1 | download | - |
Arabidopsis thaliana | AT3G10480 | seedling | 12 day old rep1 | download | - |
Arabidopsis thaliana | AT3G10490 | seedling | 12 day old rep1 | download | - |
Arabidopsis thaliana | AT3G19290 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT3G19290 | seedling | normal | download | download |
Arabidopsis thaliana | AT3G48430 | seedling | young seedlings rep1 | download | - |
Arabidopsis thaliana | AT3G59060 | seedling | normal rep1 | download | download |
Arabidopsis thaliana | AT3G59060 | seedling | normal rep2 | download | download |
Arabidopsis thaliana | AT4G01120 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT4G01120 | seedling | normal | download | download |
Arabidopsis thaliana | AT4G27410 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT4G27410 | seedling | normal | download | download |
Arabidopsis thaliana | AT4G34000 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT4G34000 | seedling | normal | download | download |
Arabidopsis thaliana | AT4G37790 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT4G37790 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G04340 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT5G04340 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G04760 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT5G04760 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G05410 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT5G05410 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G18830 | seedling | normal rep1 | download | - |
Arabidopsis thaliana | AT5G43840 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT5G43840 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G47640 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT5G47640 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G61850 | seedling | complete seedlings rep1 | download | download |
Arabidopsis thaliana | AT5G61850 | seedling | complete seedlings rep2 | download | download |
Arabidopsis thaliana | AT5G61850 | seedling | complete seedlings rep3 | download | download |
Arabidopsis thaliana | AT5G61850 | seedling | complete seedlings rep4 | download | download |
Arabidopsis thaliana | AT5G63790 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT5G63790 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G65310 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT5G65310 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G67300 | seedling | ABA treatment for 4h | download | download |
Arabidopsis thaliana | AT5G67300 | seedling | normal | download | download |
Arabidopsis thaliana | AT5G17430 | somatic embryo | 24-D induced somatic embryos rep1 | download | - |
Zea mays | GRMZM2G017087 | tassel | tassel primordia rep1 | download | - |
View the related data source
2.6 Conserved elements (CEs, comparative genomics)Back to Top
Species | Conserved element |
Aethionema arabicum | download |
Arabidopsis halleri | download |
Arabidopsis lyrata | download |
Arabidopsis thaliana | download |
Arabis alpina | download |
Arachis duranensis | download |
Arachis ipaensis | download |
Boechera stricta | download |
Brachypodium distachyon | download |
Brachypodium stacei | download |
Brassica napus | download |
Brassica oleracea | download |
Brassica rapa | download |
Cajanus cajan | download |
Camelina sativa | download |
Capsella grandiflora | download |
Capsella rubella | download |
Carica papaya | download |
Cicer arietinum | download |
Dichanthelium oligosanthes | download |
Dorcoceras hygrometricum | download |
Eragrostis tef | download |
Eutrema salsugineum | download |
Fragaria vesca | download |
Glycine max | download |
Glycine soja | download |
Hordeum vulgare | download |
Leersia perrieri | download |
Linum usitatissimum | download |
Lotus japonicus | download |
Manihot esculenta | download |
Medicago truncatula | download |
Mimulus guttatus | download |
Morus notabilis | download |
Oropetium thomaeum | download |
Oryza brachyantha | download |
Oryza glaberrima | download |
Oryza longistaminata | download |
Oryza sativa subsp. japonica | download |
Panicum virgatum | download |
Phaseolus vulgaris | download |
Phyllostachys heterocycla | download |
Populus trichocarpa | download |
Prunus mume | download |
Prunus persica | download |
Pyrus bretschneideri | download |
Raphanus sativus | download |
Ricinus communis | download |
Salix purpurea | download |
Sesamum indicum | download |
Setaria italica | download |
Setaria viridis | download |
Sisymbrium irio | download |
Solanum lycopersicum | download |
Solanum tuberosum | download |
Sorghum bicolor | download |
Tarenaya hassleriana | download |
Thellungiella parvula | download |
Trifolium pratense | download |
Utricularia gibba | download |
Vigna angularis | download |
Vigna radiata | download |
Zea mays | download |
Ziziphus jujuba | download |
Zoysia pacifica | download |
View the related data source
2.7 Predicted TFBSBack to Top
View the related data source
3. Regulations/Networks Back to Top
4. GO annotation Back to Top
Species | GO annotation | Gene2go |
Arabis alpina | download | download |
Artemisia annua | download | download |
Aethionema arabicum | download | download |
Actinidia chinensis | download | download |
Ananas comosus | download | download |
Aquilegia coerulea | download | download |
Arachis duranensis | download | download |
Arabidopsis halleri | download | download |
Amaranthus hypochondriacus | download | download |
Arachis hypogaea | download | download |
Azadirachta indica | download | download |
Arachis ipaensis | download | download |
Arabidopsis lyrata | download | download |
Auxenochlorella protothecoides | download | download |
Aegilops tauschii | download | download |
Arabidopsis thaliana | download | download |
Amborella trichopoda | download | download |
Brachypodium distachyon | download | download |
Brassica napus | download | download |
Brassica oleracea | download | download |
Bathycoccus prasinos | download | download |
Brassica rapa | download | download |
Brachypodium stacei | download | download |
Boechera stricta | download | download |
Beta vulgaris | download | download |
Capsicum annuum | download | download |
Cicer arietinum | download | download |
Camelina sativa | download | download |
Cajanus cajan | download | download |
Citrus clementina | download | download |
Coffea canephora | download | download |
Capsella grandiflora | download | download |
Citrullus lanatus | download | download |
Cucumis melo | download | download |
Castanea mollissima | download | download |
Chlorella variabilis NC64A | download | download |
Carica papaya | download | download |
Chlamydomonas reinhardtii | download | download |
Catharanthus roseus | download | download |
Capsella rubella | download | download |
Cannabis sativa | download | download |
Coccomyxa subellipsoidea C-169 | download | download |
Cucumis sativus | download | download |
Citrus sinensis | download | download |
Daucus carota | download | download |
Dianthus caryophyllus | download | download |
Dorcoceras hygrometricum | download | download |
Dichanthelium oligosanthes | download | download |
Dunaliella salina | download | download |
Eucalyptus camaldulensis | download | download |
Eucalyptus grandis | download | download |
Elaeis guineensis | download | download |
Eutrema salsugineum | download | download |
Eragrostis tef | download | download |
Fragaria x ananassa | download | download |
Fragaria vesca | download | download |
Gossypium arboreum | download | download |
Genlisea aurea | download | download |
Gossypium hirsutum | download | download |
Glycine max | download | download |
Gonium pectorale | download | download |
Gossypium raimondii | download | download |
Glycine soja | download | download |
Helianthus annuus | download | download |
Helicosporidium | download | download |
Humulus lupulus | download | download |
Hordeum vulgare | download | download |
Ipomoea trifida | download | download |
Jatropha curcas | download | download |
Juglans regia | download | download |
Klebsormidium flaccidum | download | download |
Kalanchoe laxiflora | download | download |
Kalanchoe marnieriana | download | download |
Lotus japonicus | download | download |
Leersia perrieri | download | download |
Lactuca sativa | download | download |
Linum usitatissimum | download | download |
Musa acuminata | download | download |
Malus domestica | download | download |
Manihot esculenta | download | download |
Mimulus guttatus | download | download |
Monoraphidium neglectum | download | download |
Morus notabilis | download | download |
Marchantia polymorpha | download | download |
Micromonas pusilla CCMP1545 | download | download |
Micromonas sp. RCC299 | download | download |
Medicago truncatula | download | download |
Nicotiana benthamiana | download | download |
Nelumbo nucifera | download | download |
Nicotiana sylvestris | download | download |
Nicotiana tabacum | download | download |
Nicotiana tomentosiformis | download | download |
Oryza barthii | download | download |
Oryza brachyantha | download | download |
Oryza glaberrima | download | download |
Oryza glumaepatula | download | download |
Oryza longistaminata | download | download |
Ostreococcus lucimarinus | download | download |
Oryza meridionalis | download | download |
Oryza nivara | download | download |
Oryza punctata | download | download |
Ostreococcus sp. RCC809 | download | download |
Oryza rufipogon | download | download |
Oryza sativa subsp. indica | download | download |
Oryza sativa subsp. japonica | download | download |
Ostreococcus tauri | download | download |
Ocimum tenuiflorum | download | download |
Oropetium thomaeum | download | download |
Picea abies | download | download |
Petunia axillaris | download | download |
Pyrus bretschneideri | download | download |
Phoenix dactylifera | download | download |
Phalaenopsis equestris | download | download |
Populus euphratica | download | download |
Picea glauca | download | download |
Panicum hallii | download | download |
Phyllostachys heterocycla | download | download |
Petunia inflata | download | download |
Pseudotsuga menziesii | download | download |
Prunus mume | download | download |
Physcomitrella patens | download | download |
Prunus persica | download | download |
Picochlorum sp. SENEW3 | download | download |
Picea sitchensis | download | download |
Pinus taeda | download | download |
Populus trichocarpa | download | download |
Panicum virgatum | download | download |
Phaseolus vulgaris | download | download |
Ricinus communis | download | download |
Raphanus raphanistrum | download | download |
Raphanus sativus | download | download |
Sorghum bicolor | download | download |
Sphagnum fallax | download | download |
Sesamum indicum | download | download |
Sisymbrium irio | download | download |
Setaria italica | download | download |
Solanum lycopersicum | download | download |
Solanum melongena | download | download |
Salvia miltiorrhiza | download | download |
Selaginella moellendorffii | download | download |
Saccharum officinarum | download | download |
Spinacia oleracea | download | download |
Solanum pennellii | download | download |
Solanum pimpinellifolium | download | download |
Spirodela polyrhiza | download | download |
Salix purpurea | download | download |
Solanum tuberosum | download | download |
Setaria viridis | download | download |
Triticum aestivum | download | download |
Theobroma cacao | download | download |
Tarenaya hassleriana | download | download |
Thellungiella parvula | download | download |
Trifolium pratense | download | download |
Triticum urartu | download | download |
Utricularia gibba | download | download |
Vigna angularis | download | download |
Volvox carteri | download | download |
Vigna radiata | download | download |
Vigna unguiculata | download | download |
Vitis vinifera | download | download |
Zoysia japonica | download | download |
Ziziphus jujuba | download | download |
Zea mays | download | download |
Zostera marina | download | download |
Zoysia matrella | download | download |
Zoysia pacifica | download | download |
5. ID mapping Back to Top
Species | ID mapping file |
Arabis alpina | download |
Artemisia annua | download |
Aethionema arabicum | download |
Actinidia chinensis | download |
Ananas comosus | download |
Aquilegia coerulea | download |
Arachis duranensis | download |
Arabidopsis halleri | download |
Amaranthus hypochondriacus | download |
Arachis hypogaea | download |
Azadirachta indica | download |
Arachis ipaensis | download |
Arabidopsis lyrata | download |
Auxenochlorella protothecoides | download |
Aegilops tauschii | download |
Arabidopsis thaliana | download |
Amborella trichopoda | download |
Brachypodium distachyon | download |
Brassica napus | download |
Brassica oleracea | download |
Bathycoccus prasinos | download |
Brassica rapa | download |
Boechera stricta | download |
Beta vulgaris | download |
Capsicum annuum | download |
Cicer arietinum | download |
Camelina sativa | download |
Cajanus cajan | download |
Citrus clementina | download |
Coffea canephora | download |
Capsella grandiflora | download |
Citrullus lanatus | download |
Cucumis melo | download |
Castanea mollissima | download |
Chlorella variabilis NC64A | download |
Carica papaya | download |
Chlamydomonas reinhardtii | download |
Catharanthus roseus | download |
Capsella rubella | download |
Cannabis sativa | download |
Coccomyxa subellipsoidea C-169 | download |
Cucumis sativus | download |
Citrus sinensis | download |
Daucus carota | download |
Dianthus caryophyllus | download |
Dorcoceras hygrometricum | download |
Dunaliella salina | download |
Eucalyptus camaldulensis | download |
Eucalyptus grandis | download |
Elaeis guineensis | download |
Eutrema salsugineum | download |
Eragrostis tef | download |
Fragaria x ananassa | download |
Fragaria vesca | download |
Gossypium arboreum | download |
Genlisea aurea | download |
Gossypium hirsutum | download |
Glycine max | download |
Gonium pectorale | download |
Gossypium raimondii | download |
Glycine soja | download |
Helianthus annuus | download |
Humulus lupulus | download |
Hordeum vulgare | download |
Ipomoea trifida | download |
Jatropha curcas | download |
Juglans regia | download |
Klebsormidium flaccidum | download |
Lotus japonicus | download |
Leersia perrieri | download |
Lactuca sativa | download |
Linum usitatissimum | download |
Musa acuminata | download |
Malus domestica | download |
Manihot esculenta | download |
Mimulus guttatus | download |
Monoraphidium neglectum | download |
Morus notabilis | download |
Marchantia polymorpha | download |
Micromonas pusilla CCMP1545 | download |
Micromonas sp. RCC299 | download |
Medicago truncatula | download |
Nicotiana benthamiana | download |
Nelumbo nucifera | download |
Nicotiana sylvestris | download |
Nicotiana tabacum | download |
Nicotiana tomentosiformis | download |
Oryza barthii | download |
Oryza brachyantha | download |
Oryza glaberrima | download |
Oryza glumaepatula | download |
Oryza longistaminata | download |
Ostreococcus lucimarinus | download |
Oryza meridionalis | download |
Oryza nivara | download |
Oryza punctata | download |
Oryza rufipogon | download |
Oryza sativa subsp. indica | download |
Oryza sativa subsp. japonica | download |
Ostreococcus tauri | download |
Ocimum tenuiflorum | download |
Picea abies | download |
Petunia axillaris | download |
Pyrus bretschneideri | download |
Phoenix dactylifera | download |
Phalaenopsis equestris | download |
Populus euphratica | download |
Picea glauca | download |
Phyllostachys heterocycla | download |
Petunia inflata | download |
Pseudotsuga menziesii | download |
Prunus mume | download |
Physcomitrella patens | download |
Prunus persica | download |
Picea sitchensis | download |
Pinus taeda | download |
Populus trichocarpa | download |
Panicum virgatum | download |
Phaseolus vulgaris | download |
Ricinus communis | download |
Raphanus raphanistrum | download |
Raphanus sativus | download |
Sorghum bicolor | download |
Sphagnum fallax | download |
Sesamum indicum | download |
Sisymbrium irio | download |
Setaria italica | download |
Solanum lycopersicum | download |
Solanum melongena | download |
Salvia miltiorrhiza | download |
Selaginella moellendorffii | download |
Saccharum officinarum | download |
Spinacia oleracea | download |
Solanum pennellii | download |
Solanum pimpinellifolium | download |
Spirodela polyrhiza | download |
Salix purpurea | download |
Solanum tuberosum | download |
Setaria viridis | download |
Triticum aestivum | download |
Theobroma cacao | download |
Tarenaya hassleriana | download |
Thellungiella parvula | download |
Trifolium pratense | download |
Triticum urartu | download |
Vigna angularis | download |
Volvox carteri | download |
Vigna radiata | download |
Vigna unguiculata | download |
Vitis vinifera | download |
Zoysia japonica | download |
Ziziphus jujuba | download |
Zea mays | download |
Zostera marina | download |
Zoysia matrella | download |
6. Gene sequences Back to Top
7. Comparative genomics Back to Top
7.1 Orthologous groups (OGs)Back to Top
- Green plants (157 organisms, OGs)
- Represented plants (17 organisms, OGs)
- Chlorophytae (16 organisms, OGs)
- Monocots (38 organisms, OGs)
- Asterids (24 organisms, OGs)
- Fabids (34 organisms, OGs)
- Malvids (28 organisms, OGs)
7.2 BLAST reciprocal best hitsBack to Top
You can download the data either via our ftp server or via the button bellow.
the RBH result between and
the RBH result between and
7.3 Genome alignments and sequence conservationBack to Top
7.3.1 Pairwise genome alignments
Group:Target species: Query species: Type :
Also you can download the pairwise alignments data via our ftp server.