PlantTFDB
Plant Transcriptional Regulatory Map


cis-Map

For the 65 species with regulatory element annotation (63 of which have conservation and FunTFBS annotation), a genome browser has been set up for users to browse and download these regulatory elements. Users can also download these data in the download page.


SpeciesConserved elementConserved TFBSFunctional TFBSOther annotation
Aethionema arabicum√√√
Arabidopsis halleri√√√
Arabidopsis lyrata√√√
Arabidopsis thaliana√√√DNase I hypersensitive site, TF digital genomic footprint, Histone modification, ChIP-seq based TFBS
Arabis alpina√√√
Arachis duranensis√√√
Arachis ipaensis√√√
Boechera stricta√√√
Brachypodium distachyon√√√
Brachypodium stacei√√√
Brassica napus√√√Histone modification
Brassica oleracea√√√
Brassica rapa√√√
Cajanus cajan√√√
Camelina sativa√√√
Capsella grandiflora√√√
Capsella rubella√√√
Carica papaya√√√
Chlamydomonas reinhardtiiHistone modification
Cicer arietinum√√√
Dichanthelium oligosanthes√√√
Dorcoceras hygrometricum√√√
Eragrostis tef√√√
Eucalyptus grandisHistone modification
Eutrema salsugineum√√√
Fragaria vesca√√√
Glycine max√√√
Glycine soja√√√
Hordeum vulgare√√√
Leersia perrieri√√√
Linum usitatissimum√√√
Lotus japonicus√√√
Manihot esculenta√√√
Medicago truncatula√√√
Mimulus guttatus√√√
Morus notabilis√√√
Oropetium thomaeum√√√
Oryza brachyantha√√√
Oryza glaberrima√√√
Oryza longistaminata√√√
Oryza sativa subsp. japonica√√√DNase I hypersensitive site, Histone modification
Panicum virgatum√√√
Phaseolus vulgaris√√√
Phyllostachys heterocycla√√√
Populus trichocarpa√√√
Prunus mume√√√
Prunus persica√√√
Pyrus bretschneideri√√√
Raphanus sativus√√√
Ricinus communis√√√
Salix purpurea√√√
Sesamum indicum√√√
Setaria italica√√√
Setaria viridis√√√
Sisymbrium irio√√√
Solanum lycopersicum√√√
Solanum tuberosum√√√
Sorghum bicolor√√√
Tarenaya hassleriana√√√
Thellungiella parvula√√√
Trifolium pratense√√√
Utricularia gibba√√√
Vigna angularis√√√
Vigna radiata√√√
Zea mays√√√Nucleosome positioning, ChIP-seq based TFBS
Ziziphus jujuba√√√
Zoysia pacifica√√√